Python 3.5.3 (v3.5.3:1880cb95a742, Jan 16 2017, 08:49:46) [GCC 4.2.1 (Apple Inc. build 5666) (dot 3)] on darwin Type "copyright", "credits" or "license()" for more information. >>> WARNING: The version of Tcl/Tk (8.5.9) in use may be unstable. Visit http://www.python.org/download/mac/tcltk/ for current information. =============== RESTART: /Users/ssheehan/Desktop/lec33/gene.py =============== AGAATTGTGTGTCTCAGGGTAATGGACAAGGGCTTAAAGTTCATACACTTAGCGCCCCCGGTCCGGTAGCTTAGCATAACGGACAACACAGGCCCTTCCTCACAAACGTAACCATCGCAGCCGCCGGGGTCAGTGAACTGATTCCTGGGGCTATGGAGTATAGTGTTACGATAGAGTTGTGTATCTTGTTCTTATTGCTAACCCGGATATGACCATACGTCGAATATACCGTGTAGTCTACCAGTCCGTGAACAAATTCCCCCCCAGGACTTCATACCGTCGGGTCTGCGGGGTCTGATTGTCATTCTCTGTTTGCGTCTCCTTGTGAGGACGGAATGCGGAACACTTTGAGATCTCAAATGGTTCGCGATTGGCAACGGATCAGCGACAAACTAGACTCGCATACGAGGTGCCAGAAGACAGATGCCCGATTAAATAAGGAGTTTCCGAGAATCTCGAAGGTCCCGACGACACTAATTTAAAGGAAGTGAATCGGGTTTTCCTCAAAGCTGGGGGTAGGGTATCCTCATCGCGAAGTTATCTCTTGCACCGGGGGCAGATTTGTGGTTTAAACTGAAGCAATATTCCACTACATGGCTGCGACATGTAGAGCAACGGCGATCGTTCATCTCCGACTGGGGGCTCCAGAGGTCAACTCTGAGCACTGCCCTACCTAGTTCTCAAATCTCGGATCGGGGATACGGTCATTTTCCGAAGTATGCTCGAACATCATACGCGGACGCCATAGCAATTTTTACTCACGGCCCTTAATTTAAGCAAAGTCGCAGATTACGTGCGCCGAGGCAATTCGTGCCTAGGTATGCTCGCTTTCTGCACAGTTATATAGTATACGTATGCAATCTCTATACTTAACGCGAGTCACGTGAGGTAGTCATGCAAGTTATCACGTCCATCTTTTGTGACGTACAGTTAGACCTTAGATCCAAAGTTACTGGATTGGCCTAGGGCCATGGCGATAGAATGGGGGGCTTGCTTTTCCTGTTAAAGGACGTTAACAGCTATAACGCCGATGACCTTCCTCGGGGTGATTAGGCCAGCTTCGGCTTGTAATTGAGGACCTGATAAGGTCTTGACTTGCTTACCCAATTCTGATTTCTTATCTGAGTCGCGAACAAATTGTCGATAGAACCGCTGTCACGCAGCAGTATAGGGAGGTACTCCCCTAGGCACCTTGCCGGGTCCGTGCATATGGACCCGGTCGGGATACCTACGAGTGGATCTAGTATCCCAGCAAACTCATCAAGATGTCCAAGGACAAGGCGGTAGCGGAGTATGGTGCCCGTATGTTCGAGTCTGGGATAATTAACTGCTATGTCTGTTAGTCGGGGTACAGAACTGGCGTTCTTGGCTCGCCGTCTCACATTGCTGGCGACCCGCGGACGCTGGCGTACCTTAACGAGACGTTTCCCGCTAAGAGATGGGCTAATGTTCGGGTACTATCAGGATTTTTAAGTACTACGTCCTGGATATCTAGATCGGCCTTTCTCAACAGCCAGTCCCTACGCTATTGGGTCATCACGGCGACTGTCCACCGATTCCGGAGATTAACTGAAAGACATAAGAACCGGTTAGCTCGCAAGCATGTGGTGTCGCTCACCTTATGTAACCCTTCCTTACAATATTCACCGACGTAGAGGCGAACAGAGACGCGGCTCGGTGGTGGAAAGTCATCTCGACGGTTTTCACTTCGCCGCACAGCAACAGTCGAGCTTCCGTTTGCATGCCCATCTCGTCCGCGCCGGACAATTGGTGCGACCCCACATGGGACGGGGACATTGACTTTAACATTGTAACTTACCTTAAAGGCGGAGCCCCCTCGTATCACGTAAACGATTACGGTCCAAACTGTTTGGCGTTCCTTTAGACATGGGAATATAAGTGGTCGAGGCCCTTGTGGGAACATGTGAGGATGACTTAAAAACGAGGTTACTCTAGGTCACGGCCTCATCACGGGTGGCGTCTCGTTGGTCTATCAGCACTGCAGAACGACGCACGGGGGGAGGCTGTAGGCTGGCATAGGGGAATGTCCTGCGAAGGGATCCAGTCACAAACTCGATAGCGTTTGCCTCTGCACGTTGGTAAGAGCCCGACAGCTGAGATCGCAATGGTGCGGTTGGAGCAACTGCCCCCGGGGGAGGGCCGATAATCACGATGTCGTGGGTGGTGCTAGCACCTGTATTCCCCGGAGTTAACGGTCCGACAGGATACGCCCCGTCGGTTTTACTGTCTCGTCTTTTATTATCTACTGGCGGACTGCTTAAGTATGACGTATTGGTGTCGGCGTAACGTGCC >>> =============== RESTART: /Users/ssheehan/Desktop/lec33/gene.py =============== GAACTCGGCGCGGGTATTCGTTGTGCCGCAGTTGTCCTCTGCGTAAGCCAGATACATGGCTTATGGTGCAGTCTAGAATAGGTTCAACCTGTCGGTCAACGACAACCCCAAGACGAGCCACCAATTCGGGGATTGCCCTCCTATAAGCCACCAGGGTCAAGGACTAGTTGCCCCTGGGTGACGTTAATGCTCAGAACGATTAGCCGCCAATAGCGCCTTGGTTATCTGCTCTCCGGAACTATAATCCGTAAAAAGTTACCTGCTCGACCTTACACCTCTACTGCCGTCGCCACTATAATCGGACTCGCTGATAGTAACTCAAGCATTAGTAGAGACCGGTTTCGGTAGAGTGGGCACCACACGCTTTCGACCGTAAACTTGCTCGCTGGTTAAATCTGGACAAGTATGCTTCCACTTCGGGAGAAGCAACTTTCATTCGCAAGTATGAACTGCAGATGCATATCGGAATAAGGCTCGGAAGAGAGTTACGCTGGAAATCCAGGTTCTATTCCTGACACTTACACTAAAATAGTGACCCTCCATACGTCTTGGCGTTCTTTGTCATGCTTAAAGCGGTACGACGGCTTACTTACAGGCTAAGACGCCTGTTTGAAGTAAGAGTAAGAATCAGTTTCCGCGACAATGTCACACCATATACTTGTCAATCCTGATCGATAAACTATCTTGGACCCCATTACTCATATACATTAGACACTAGGGACCACGAGGCCTCCGAGGTACTACTCCAATCAGCGAAACCCGACAGACCGTCTAGCAAAGGCCGGTTGTTCGGCTTCGCGGGGATCGTTTCCGCGCTTACCGTCTGCCATTGGTAGCGGCCTTAGACCCGCGATTGTTAGTTACCCTTTCGCATCCTCACCAAAGGCTGACTCCCTGTTCGGCGTCCTTTGTCGCAGAACTAACTATTGAAAGACATAATAGGGTGATGATTTGTTGCCCCCGGCGTCGGCGTGCGCCCATAGCGTAATTCTTACACATCCTTCCGCGGGTCGCTATTTCAGTCGTAGACATTACACGAGAACCAATACCGATCTTCCGGGAGAGGGAAAGGCAAGAGGCCGCTATTCGCACTGATTCAATGAAGAGGGTACGGAACACGCTCCAGATAACCACGTTGGGTCGTGGCCTCCTGGAGCAACCAGACTTCGGTGAAGAAGACGGATCACTACAGTCTCGCTCGACTGCTATCTCCTCCAGCTACACTTAAACAATCCATTGGTTCGCAACGGCCCACCATTCTAGAGTCAGCATTACTTTATACGCCTACCTGTGTCCATTATTGCATCTACTGTACCATGACTTTTGAGGTACCGCCTTCAACGTCTGTCGGGGGCAGGGAATCTCAGTGACAGTCTGCCCAACGCGTAATCGTACAGACAGCCCACAATTCTATACGGAGCGGGTAGTTACGACTCCCATGCTGCACACAACATCCAGACCACGCTCATTACCTACGGAGACTGGAATTGCTAATTTTTGACGGATGCCAGTCGTGGGTGTGTGCGTTGGCCGCAACCGAAAAGAATCAGTGTATAGTTCGGTTAAATGTGCCCAATCCCCTTAGAGTCTTGTCTTAAGACCTGCGGTACCATAACTTTCAAGCATAAAGATCCACGGATCACGCGACGGCGGTACGCAACTGGCACTTGAGGATGTGACCATCTAGTCATTGCAAGTTTGAAACAGGGTGAATGTTAGATATGATAGGGCACCTGAGACCATGGCGTAACATGACGGCAATTGAAAGCATATTAGGAATATAAAACACAACCCGTAGCGTACTCGCAAGTATCTCCATGGACAAAGGGTAGCACCGTTGGTAGAGATCATATGCTTTGCCATACACGGCACGGCGAACATCATCCCAACTTAATTATGGACTCATGAGGCGTTGCTATCCCAGTCTACGCCAAATTACTACCGTCATTTCCGGAGTTGAGAGCACACCCGGACTATGAAAGGTTCAATATGTGCATATTAATTCAGTATTAAGCTTTTACCCAAGTGAGTTTAACGTATTCATATTATAGCGCTTCCGGCAGAGCCCGGGAAGCAAAAAGTAGAACGGGAAAGGAGGACCTTAGGATCACCGTAAGTGAATTAGTGGACTCAGTTCTTCTGGTCTTCTTTGGCAAATGCGATTAACAATACTAGTGGGCAGAAATTCCCAGACATCGGTTCACGGAGGCGAAACTGCGCATCACTTGACGACGGTTGAAGGCACCCTTGCACTTATGCCTTTGACCTATTTCCACATTCGTAGTATTACCCTGAGGGTTGACAAGTCCAATT False True False False True False True False True >>> =============== RESTART: /Users/ssheehan/Desktop/lec33/gene.py =============== CTGGACAGAAGCATTTGCGAAGGCCAAAACGTGGTTGGTGTTTGCCGGGTAACAAGAGATGGCCGCTTGTATAGCGCACGCCAGCCTCTCAGGCGCGCTCTACTCTTTTGTGTACCTGAACCTTCGCGGCGCACGCTTCTTAGCGTACAATGAGGCCTTGCCTTGCCTGGAAGTTCTCCCAACGTGCTTCGGGCAGACCCCACCAACTTTTATGTGAATCGGATATATCAGGGCCCGAACCATGCTCCATCCCCCGGTGAGTGACGCCGCCACAGCAGCAAGAGTTGGTGGTGGGGTGAGTAGTAGGAAGAGCTGGTCAGTGACATTACTGCTTCAGTGCCAACATCCCATCTATTTGATCGGACTACTCACGACGTGTGTCGATTGACTAGGCGCGCCTTTAGGGCTTAATTGCCTCGGTTGCGGGTCTTGCAAGTATCAAAGACCCCTCACTTAACGTTACAAGAATCAGGCACTCCAGCCTATTTGCTGCACGTGGTCCTAGGTACATGGGAACGGAGTGTATCCCTATTTCTGGGTAGTGATTTGCGATTTGGAATGAAAACTGGAATAGTGTGACACAATGGGTTTATCCCGCTCACGCTATGATTTAGGACGTAGCTTCTTGCCGATTAGTTTGATTTTCATTGCGGGTAGGCCGGAGGCAGCTGGCGTGCCGCGCTACTATAGGGGGCGGAAATTGTACAGCAGTAAGTGGGATCAATTGGGGTTCTAACTTTAAATCCGGTACTAAGGCAATCGTATTATCCTATGTGCGATAAGTCAGATGTTTTGAAATTAGAAAGTATGTAATTATACTACTATCGATTTTTTATCCATAAACTCACAAGTCAGGTTCATTGGAAATGGTGAAACTCGTCGGATCATCCGAAGCAAAGGATCACACTCTGTTTCCTGGGTTATACGTTTTTTTTCGGCTCAGAGATGCCCGAGAGACGAACGTTTAGACGTAGCATTTAATCCAAAGTGCATGCGGGTTGGTTTTCGTAATAAACCGTACACACTAGAGCTCACAGTCTGTTGGGTCGCGGGTCGACTTGCCAATCCCAGCTGTGTCACGTTGATGACATTAAGCCACAATCAGAGCGGTCGTGAGTGTCCGGTGTAACCCAAGATCTGTCTGTACTATCATCAATAGTATTGTCGTACTTGTACATCCTGCCAGAAGTGGGCACACGAAGCGACAGGGTTAAAGCACACATTTGAGCTTGTATCGCCGTGAGTAGGCCTGCCGTAATAAAGCAGATTTTCTGGCTCCAAATTTCATCAACTGTGGAGGAAAGTGACTCTCGTCAGCTCCGATGGTATATGATGAGTGGAACAAGTGCCACAAAGCTTGTCCGTCGACCCCTATTCATAGAGTAACGTCCTAGCCGGGGCCGCTTGCTTGCATAACGATTAAGCTAGCATAGAGTAGCGCAGGCGAATGTAGGGGATGTTGTTATCACTGGCGTCTCGGAGTGTCTGCAGGTAGAGGAGTCGATCATTTGTACAGGGCGAGGACCTGTGCTTCTTCGGTCTGTACGGCGCTGACGACCGGTAATCATCCACGGCATCGACTAAAACTGGCCCAAAGTAGGAGTGGGAAGGCAGCATTGCTAGCTGTGAACGTTACGTGCTAAATGCCCGACCATTGTCTTTCCCGATCTTCGGACTGGGACCCAGCTCAGCGGGCCTAGCAGTACGCTGGGTTCAACTCTTAGCGTGGCAAGCAATAGCGCTTACTAACTCGTCGTGTGTGCCAGTACCTTACTGACGGGGCGTATTGCCCGCTAGTTACTCACACCTGAGGCATCGCTGACTTCCGGTACCGAGACTCTCTACTTCGTGCTAATCATTATGGCCTATGTGTCGTTTGAGTGATGGAATTCCACTATACATTATCGTTTAGCCACTTCTGTTTATATGCTATTAGCATGATTCCTTGCTGGTGATGCGTTTTAAATCGTATTCCCCACCGGGGATACCAAGAGTACACGCGCGTTCATGGTCTCATTGTCCCATTTGCGAATCAGTTGCACTCGCTGGCCATTCCCACATATAAGATGACTGATAAAATGTTGGGACCACCCCAGAACTAGGAGCAAGTTAGCCGTAAAAGGGTTCACAAATAGACATTGACAGGCGTGGCGATCTACCTTCAAGTAGACCCGACGGGGGATACTTCCACAGTTCGGCTCTGAAATAACATACAAAGAAAGTTACCCGGCTTCAGTCTTAGACGCATCCACCAGGTATCTATCAAGATATCGACGTATGCATCGATAAATCAGGTCTAGCGAACCCTAGGTG 2384 not in gene 4928 T 8374 not in gene 238 not in gene 3872 C 1278 not in gene 4374 C 12898 not in gene 5019 G >>> =============== RESTART: /Users/ssheehan/Desktop/lec33/gene.py =============== 2384 not in gene 4928 C 8374 not in gene 238 not in gene 3872 C 1278 not in gene 4374 C 12898 not in gene 5019 C >>> =============== RESTART: /Users/ssheehan/Desktop/lec33/gene.py =============== 2384 not in gene 4928 C 8374 not in gene 238 not in gene 3872 A 1278 not in gene 4374 T 12898 not in gene 5019 T >>> start = 2934 >>> end = 5247 >>> length = end - start >>> length 2313 >>> query = 4928 >>> index = query - start >>> index 1994 >>> query = 2934 >>> index = query - start >>> index 0 >>> query = 5246 >>> >>> >>> >>> "hello"*5 'hellohellohellohellohello' >>> ["hello"]*5 ['hello', 'hello', 'hello', 'hello', 'hello'] >>> [0]*5 [0, 0, 0, 0, 0] >>> matrix = [] >>> matrix.append([0]*5) >>> matrix [[0, 0, 0, 0, 0]] >>> matrix.append([0]*5) >>> matrix [[0, 0, 0, 0, 0], [0, 0, 0, 0, 0]] >>> matrix.append([0]*5) >>> matrix [[0, 0, 0, 0, 0], [0, 0, 0, 0, 0], [0, 0, 0, 0, 0]] >>> matrix[0][0] = 7 >>> matrix [[7, 0, 0, 0, 0], [0, 0, 0, 0, 0], [0, 0, 0, 0, 0]] >>> matrix[0][1] = 3 >>> matrix [[7, 3, 0, 0, 0], [0, 0, 0, 0, 0], [0, 0, 0, 0, 0]] >>>